Sensitive and Specific Global Cell Surface N-Glycoproteomics Shows Profound Differences Between Glycosylation Sites and Subcellular Components

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Cell surface glycans are essential for establishing cell communication, adhesion, and migration. However, it remains challenging to obtain cell surface-specific information about glycoconjugate structures. Acquiring this information is essential for unraveling the functional role of glycans and for exploiting them as clinical targets. To specifically analyze the N-glycoprotein forms expressed at the cell surface, we developed a C18 liquid chromatography (LC)-mass spectrometry (MS)-based glycoproteomics method in combination with highly specific cell surface protein labeling and enrichment using a biotin label. The surface-specificity of the method was validated by MS-based proteomics of subcellular component marker proteins. Using the human keratinocytes N/TERT-1 as a model system, we identified and quantified the glycosylation of hundreds of cell surface N-glycosylation sites. This approach allowed us to study the glycoforms present at the functional relevant cell surface, omitting immaturely glycosylated proteins present in the secretory pathway. Interestingly, the different stages of N-glycan processing at individual sites displayed at the cell surface were found to correlate with their accessibility for ER-residing processing enzymes, as investigated through molecular dynamics simulations. Using the new approach, we compared N-glycosylation sites of proteins expressed on the cell surface to their counterparts in a total cell lysate, showing profound differences in glycosylation between the subcellular components and indicating the relevance of the method for future studies in understanding contextual glycan functions.

OriginalsprogEngelsk
TidsskriftAnalytical Chemistry
Vol/bind95
Udgave nummer47
Sider (fra-til)17328-17336
Antal sider9
ISSN0003-2700
DOI
StatusUdgivet - 2023

Bibliografisk note

Funding Information:
The authors would like to thank Prof. Manfred Wuhrer (Leiden University Medical Center, The Netherlands) for the insightful discussions on this work. This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (GlycoSkin H2020-ERC; 772735), the European Commission (Imgene H2020 and Remodel), Lundbeck Foundation (R313-2019-869), Danish National Research Foundation (DNRF107), The Neye Foundation, The Independent Research Fund Denmark, The Friis Foundation, The Michelsen Foundation, and the A.P. Møller og Hustru Chastine Mc-Kinney Møllers Fond til Almene Formaal. R.J.W. is thankful for NSF (DMR-1933525) and NIH (1R24GM136984) for support.

Publisher Copyright:
© 2023 The Authors. Published by American Chemical Society.

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